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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_23079593_23081412_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
23079593 - 23081412
Intron Length:
1820

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACC|GTGAGTAGC
5'SS Class:
major
3'SS Sequence:
TCTGTTCCTGAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAC
U12 Branch Point Sequence:
TGGTTTCTGACT
Flanking Amino Acid:
REEAAEIEQTVRQAALALKP
Intron Amino Acid Position:
442

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.5
0.37
1.3
63.5
42.9
Major BPS
81.4
0.78
0.9
71.3
36.7
Major PPT
71.4
0.48
1
72
33
Minor 5ss
32.5
-2
2.7
41.4
38.2
Minor BPS
53.5
0.19
1.7
71.71
39.6

Associated Gene:

Gene:
POLL
Ensembl Gene ID:
ENSAPLG00000010211
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041762
23061191 - 23082283
21093
ENSAPLT00000026747
23072117 - 23082283
10167
ENSAPLT00000010641
23064579 - 23082283
17705
ENSAPLT00000048426
23061988 - 23082283
20296