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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_23081582_23081918_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
23081582 - 23081918
Intron Length:
337

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTAAGAGGG
5'SS Class:
major
3'SS Sequence:
TCCCTTTCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTCAG
U12 Branch Point Sequence:
TGCCACTCAGCT
Flanking Amino Acid:
TKLLDSLRRSGFLTDDLVSQ
Intron Amino Acid Position:
498

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
1
61.1
43.9
Major BPS
50.8
0.02
1.5
61
37.5
Major PPT
79.3
0.66
0.7
72.1
32.5
Minor 5ss
30.3
-2.3
3.3
39.2
46
Minor BPS
46
-0.2
1.9
64.08
45.3

Associated Gene:

Gene:
POLL
Ensembl Gene ID:
ENSAPLG00000010211
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026747
23072117 - 23082283
10167
ENSAPLT00000010641
23064579 - 23082283
17705
ENSAPLT00000048426
23061988 - 23082283
20296
ENSAPLT00000041762
23061191 - 23082283
21093