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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_23092573_23092669_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
23092573 - 23092669
Intron Length:
97

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACTGGCC
5'SS Class:
major
3'SS Sequence:
TCCCCGTCCCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GCCCCAT
U12 Branch Point Sequence:
TCCGCCCCATCC
Flanking Amino Acid:
TIGFIFPFLQMSAGAFCYLV
Intron Amino Acid Position:
519

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.8
0.44
1.1
60.9
39.7
Major BPS
46.8
-0.2
1.4
54.3
42.9
Major PPT
69.7
0.44
0.8
60.6
35.2
Minor 5ss
29.5
-2.4
3.6
42.4
44.6
Minor BPS
41.6
-0.6
2.1
50.79
46

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008660
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009113
23088998 - 23098038
9041