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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_23092798_23093909_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
23092798 - 23093909
Intron Length:
1112

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGTCTG
5'SS Class:
strong_major
3'SS Sequence:
CCTCCCTCCACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTGAC
U12 Branch Point Sequence:
CCTCCCTCCACA
Flanking Amino Acid:
GIIAGFCMGPAGVPFLMTAE
Intron Amino Acid Position:
476

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.6
0.72
1
68.8
43.8
Major BPS
68.9
0.47
1
59.2
39.1
Major PPT
74.3
0.55
0.7
67.8
25.7
Minor 5ss
31
-2.2
3.2
40
46.1
Minor BPS
48.7
-0.1
2
60.78
45.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008660
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009113
23088998 - 23098038
9041