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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_23096104_23096174_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
23096104 - 23096174
Intron Length:
71

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCCTG
5'SS Class:
strong_major
3'SS Sequence:
CGTCCCGTTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTGAC
U12 Branch Point Sequence:
TTTTTTGTGACA
Flanking Amino Acid:
VLGLPELLGKERYWPLFLAV
Intron Amino Acid Position:
273

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
68.8
43.8
Major BPS
71.3
0.53
1.2
63.1
44.5
Major PPT
71.5
0.48
0.9
61.2
40.1
Minor 5ss
36
-1.6
3.2
46.7
48.6
Minor BPS
59
0.28
2
77.15
33.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008660
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030137
23088998 - 23098038
9041
ENSAPLT00000009113
23088998 - 23098038
9041