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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_23096321_23096490_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
23096321 - 23096490
Intron Length:
170

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGTGCC
5'SS Class:
strong_major
3'SS Sequence:
CCCTGCTCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CATGCAT
U12 Branch Point Sequence:
CTCCCATGCATG
Flanking Amino Acid:
IGRSITGLHAGICLSVVPLY
Intron Amino Acid Position:
224

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
1
71.2
34.2
Major BPS
54.9
0.12
1.4
67
39.8
Major PPT
70
0.45
0.8
60.7
35.3
Minor 5ss
27.1
-2.6
3.2
35
41.6
Minor BPS
39.6
-0.9
2
42.49
42.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008660
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030137
23088998 - 23098038
9041
ENSAPLT00000009113
23088998 - 23098038
9041