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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_23096858_23097197_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
23096858 - 23097197
Intron Length:
340

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGGGAC
5'SS Class:
strong_major
3'SS Sequence:
CTCCACCCCACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACCACAT
U12 Branch Point Sequence:
TCTCCCTCCACC
Flanking Amino Acid:
NLAVVNSPAVHIKDFYNTTW
Intron Amino Acid Position:
129

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
1
69.2
35.6
Major BPS
56.3
0.16
1
62.9
34.3
Major PPT
68.5
0.42
0.8
60.8
29
Minor 5ss
29.7
-2.3
3.5
37.5
41.8
Minor BPS
53.4
0.09
2
68.24
43.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008660
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030137
23088998 - 23098038
9041
ENSAPLT00000009113
23088998 - 23098038
9041