Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_23108203_23111406_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

23108203 - 23111406

Intron Length:

3204

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GTG|GTAAGAGCT

5'SS Class:

strong_major

3'SS Sequence:

CACTTGCTTTTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTAACAT

U12 Branch Point Sequence:

TGTGAATTAACA

Flanking Amino Acid:

AGTLCLRTLVEHSGRVFRLQ

Intron Amino Acid Position:

556

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.7

0.8

0.9

74.3

34.1

Major BPS

0.52

1.1

77.7

35.3

Major PPT

72.6

0.51

0.9

69.5

36.5

Minor 5ss

33.2

-1.9

3.4

45.7

43.4

Minor BPS

55.7

0.18

1.9

70.69

40.9

Associated Gene:

Gene:

BTRC

Ensembl Gene ID:

ENSAPLG00000008388

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000008717

23108009 - 23201303

93295

ENSAPLT00000024667

23108009 - 23171903

63895

ENSAPLT00000021619

23105980 - 23190047

84068