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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_23108203_23112112_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
23108203 - 23112112
Intron Length:
3910

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGGCTG
5'SS Class:
major
3'SS Sequence:
CACTTGCTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTAACAT
U12 Branch Point Sequence:
TGTGAATTAACA
Flanking Amino Acid:
NKRIVSGAYDGSILEESFDF
Intron Amino Acid Position:
529

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.5
0.58
1
60.4
45.8
Major BPS
71
0.52
1.1
77.7
35.3
Major PPT
72.6
0.51
0.9
69.5
36.5
Minor 5ss
28.5
-2.5
3.3
30.2
42.9
Minor BPS
55.7
0.18
1.9
70.69
40.9

Associated Gene:

Gene:
BTRC
Ensembl Gene ID:
ENSAPLG00000008388
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047731
23108109 - 23201303
93195