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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_23111486_23112112_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
23111486 - 23112112
Intron Length:
627

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGGCTG
5'SS Class:
major
3'SS Sequence:
TATTCACTACTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TATTTATTCACT
Flanking Amino Acid:
NKRIVSGAYDGKIKVWDLVA
Intron Amino Acid Position:
529

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.5
0.58
1
60.4
45.8
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
68.1
0.41
0.9
60.9
40.1
Minor 5ss
28.5
-2.5
3.3
30.2
42.9
Minor BPS
58.8
0.36
2
82.01
39.1

Associated Gene:

Gene:
BTRC
Ensembl Gene ID:
ENSAPLG00000008388
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024667
23108009 - 23171903
63895
ENSAPLT00000021619
23105980 - 23190047
84068
ENSAPLT00000008717
23108009 - 23201303
93295