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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_23116883_23119245_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
23116883 - 23119245
Intron Length:
2363

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGTGTGCT
5'SS Class:
strong_major
3'SS Sequence:
TCTGAAACTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
AAATCTGAAACT
Flanking Amino Acid:
IITGSSDSTVRVWDVNAGEM
Intron Amino Acid Position:
369

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.1
0.8
0.9
76.6
31.9
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
68.2
0.41
1
59.9
40.3
Minor 5ss
36
-1.6
3.2
49.9
46.5
Minor BPS
47.6
-0.1
2.2
68.11
42.8

Associated Gene:

Gene:
BTRC
Ensembl Gene ID:
ENSAPLG00000008388
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024667
23108009 - 23171903
63895
ENSAPLT00000021619
23105980 - 23190047
84068
ENSAPLT00000008717
23108009 - 23201303
93295
ENSAPLT00000047731
23108109 - 23201303
93195