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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_23119365_23119813_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
23119365 - 23119813
Intron Length:
449

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGAACT
5'SS Class:
strong_major
3'SS Sequence:
TTTGCTCTCCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
TGTTTTCTAATG
Flanking Amino Acid:
VSGLRDNTIKIWDKNTLECK
Intron Amino Acid Position:
330

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.8
0.92
0.8
83.3
27.9
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
77.2
0.61
0.8
70
36.5
Minor 5ss
30.7
-2.2
2.9
41.1
44.9
Minor BPS
56.4
0.06
1.7
64.06
38.4

Associated Gene:

Gene:
BTRC
Ensembl Gene ID:
ENSAPLG00000008388
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047731
23108109 - 23201303
93195
ENSAPLT00000024667
23108009 - 23171903
63895
ENSAPLT00000021619
23105980 - 23190047
84068
ENSAPLT00000008717
23108009 - 23201303
93295