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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_23119952_23120835_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
23119952 - 23120835
Intron Length:
884

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGAAT
5'SS Class:
strong_major
3'SS Sequence:
GTCTCCCCTCAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAC
U12 Branch Point Sequence:
CTGTATTTACTT
Flanking Amino Acid:
LYPKIIQDIETIESNWRCGR
Intron Amino Acid Position:
284

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.5
1
0.8
87.7
27.9
Major BPS
78.8
0.71
0.9
69.7
37.1
Major PPT
64.5
0.33
1
60.9
35.6
Minor 5ss
33.9
-1.8
3.3
47.8
47.9
Minor BPS
50.3
0.09
1.8
67.86
43.9

Associated Gene:

Gene:
BTRC
Ensembl Gene ID:
ENSAPLG00000008388
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024667
23108009 - 23171903
63895
ENSAPLT00000021619
23105980 - 23190047
84068
ENSAPLT00000008717
23108009 - 23201303
93295
ENSAPLT00000047731
23108109 - 23201303
93195