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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_23129803_23160456_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
23129803 - 23160456
Intron Length:
30654

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTAGA
5'SS Class:
strong_major
3'SS Sequence:
TCTTTCCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TTCTTATTAATG
Flanking Amino Acid:
AMKTENCVAKTKLANGTSSM
Intron Amino Acid Position:
112

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.1
0.85
0.9
80.8
33.6
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
90.7
0.92
0.6
88.8
20.5
Minor 5ss
36.8
-1.5
2.7
42.7
38.3
Minor BPS
63.1
0.27
1.7
67.73
40.4

Associated Gene:

Gene:
BTRC
Ensembl Gene ID:
ENSAPLG00000008388
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024667
23108009 - 23171903
63895
ENSAPLT00000021619
23105980 - 23190047
84068
ENSAPLT00000008717
23108009 - 23201303
93295
ENSAPLT00000047731
23108109 - 23201303
93195