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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_23169805_23189945_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
23169805 - 23189945
Intron Length:
20141

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACTTTCT
5'SS Class:
major
3'SS Sequence:
CTTTCTTTCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAA
U12 Branch Point Sequence:
CTTTCTTTCACA
Flanking Amino Acid:
PGTGALPAFQNSSEREDCNN
Intron Amino Acid Position:
56

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.3
0.64
1.1
74.5
36.6
Major BPS
73.8
0.59
0.9
74
26.8
Major PPT
87.5
0.84
0.7
83
25.4
Minor 5ss
41.8
-0.9
3
60.1
44.2
Minor BPS
69.1
0.59
1.7
78.6
38.6

Associated Gene:

Gene:
BTRC
Ensembl Gene ID:
ENSAPLG00000008388
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047731
23108109 - 23201303
93195
ENSAPLT00000021619
23105980 - 23190047
84068
ENSAPLT00000008717
23108009 - 23201303
93295