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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_23225021_23225808_R

Intron Information:

Intron Rank:
132390
Intron Class:
major
Intron Phase:
Intron Coordinates:
23225021 - 23225808
Intron Length:
788

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAGGGG
5'SS Class:
major
3'SS Sequence:
GCTTCATCTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GCTTCAT
U12 Branch Point Sequence:
TGTGCTTCATCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.5
0.65
1
61.1
43.7
Major BPS
69.6
0.49
1.3
73.6
41.8
Major PPT
76.1
0.59
0.9
66.3
39.8
Minor 5ss
28
-2.5
3.5
37.8
47.1
Minor BPS
50.4
0.09
1.9
72.71
44.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018485
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027794
23224682 - 23232193
7512