About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_23226989_23231786_R

Intron Information:

Intron Rank:
132392
Intron Class:
major
Intron Phase:
Intron Coordinates:
23226989 - 23231786
Intron Length:
4798

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGGATTAT
5'SS Class:
major
3'SS Sequence:
CCCCCTCTCGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCTC
U12 Branch Point Sequence:
CTCTCCTTCTCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.4
0.58
1
73.4
33.5
Major BPS
33.6
-1
4.2
71.3
36.7
Major PPT
73.5
0.53
0.7
67.7
25.7
Minor 5ss
34.4
-1.8
3.3
48.2
47.9
Minor BPS
44.4
-0.3
3.6
75.16
47.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018485
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027794
23224682 - 23232193
7512