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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_23257371_23278189_R

Intron Information:

Intron Rank:
147913
Intron Class:
major
Intron Phase:
Intron Coordinates:
23257371 - 23278189
Intron Length:
20819

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTGAC
5'SS Class:
strong_major
3'SS Sequence:
TTCTGCTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAA
U12 Branch Point Sequence:
TGTTTCTTAACG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.5
0.98
0.7
80.9
25.7
Major BPS
82.2
0.8
0.8
71.9
35.8
Major PPT
85.8
0.81
0.8
80.4
31.6
Minor 5ss
27.5
-2.6
3
33.8
42.3
Minor BPS
81.4
0.85
1.2
79.89
36

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026863
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022747
23256893 - 23279051
22159