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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_23333674_23335845_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
23333674 - 23335845
Intron Length:
2172

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGTAAC
5'SS Class:
strong_major
3'SS Sequence:
TGTCTTTATTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
TTGTCTTTATTT
Flanking Amino Acid:
CFDTVNSNQRQHLLKLCGAL
Intron Amino Acid Position:
1142

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
81.4
32.7
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
78.5
0.64
0.9
77.9
35.6
Minor 5ss
35.6
-1.6
2.7
37.5
40.1
Minor BPS
69.5
0.69
1.5
83.25
38.8

Associated Gene:

Gene:
SLF2
Ensembl Gene ID:
ENSAPLG00000004041
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004149
23329936 - 23357231
27296