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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_23335924_23336399_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
23335924 - 23336399
Intron Length:
476

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATATAGC
5'SS Class:
major
3'SS Sequence:
GGTTTCTCTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTGAC
U12 Branch Point Sequence:
TGTGCTTTGACT
Flanking Amino Acid:
DHLHIELEQEVYYLVYILLH
Intron Amino Acid Position:
1116

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.3
0.67
1
71.2
38.9
Major BPS
74.1
0.6
1
66.7
39.9
Major PPT
75.2
0.57
0.9
66.7
40.6
Minor 5ss
41.5
-0.9
2.7
54.4
42.8
Minor BPS
71.7
0.76
1.3
83.64
37.6

Associated Gene:

Gene:
SLF2
Ensembl Gene ID:
ENSAPLG00000004041
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004149
23329936 - 23357231
27296