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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_23337896_23338501_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
23337896 - 23338501
Intron Length:
606

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACTTCA
5'SS Class:
strong_major
3'SS Sequence:
TATTCTTTTAAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
ATTCTTTTAAAG
Flanking Amino Acid:
LISIKDWDTKMPELCLAVSE
Intron Amino Acid Position:
1014

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
1.1
77.7
33.5
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
77.8
0.62
1
78.7
33.3
Minor 5ss
46
-0.4
2.5
59.7
44.7
Minor BPS
60.6
0.19
1.4
64.12
37.5

Associated Gene:

Gene:
SLF2
Ensembl Gene ID:
ENSAPLG00000004041
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004149
23329936 - 23357231
27296