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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_23340446_23342217_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
23340446 - 23342217
Intron Length:
1772

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTATT
5'SS Class:
strong_major
3'SS Sequence:
CTTTTACTTGTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAA
U12 Branch Point Sequence:
ATATCTTTTACT
Flanking Amino Acid:
NSLMEITVKNASISDEQSKP
Intron Amino Acid Position:
871

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.8
88.7
25.1
Major BPS
81.6
0.78
0.8
82
24.9
Major PPT
82.9
0.74
0.7
78.1
29.4
Minor 5ss
36.4
-1.5
3
48.3
41.8
Minor BPS
69.6
0.7
1.6
83.09
37.6

Associated Gene:

Gene:
SLF2
Ensembl Gene ID:
ENSAPLG00000004041
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004149
23329936 - 23357231
27296