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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_23343779_23345358_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
23343779 - 23345358
Intron Length:
1580

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGAACA
5'SS Class:
strong_major
3'SS Sequence:
CTTTGTCTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTCCAT
U12 Branch Point Sequence:
TTTTCTCCCACT
Flanking Amino Acid:
PQNPIEKLLLSSDVTQQLFL
Intron Amino Acid Position:
811

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
0.99
0.8
83.4
27.8
Major BPS
55.9
0.15
1.3
66.4
39.9
Major PPT
86.1
0.81
0.8
79.9
32.2
Minor 5ss
33.8
-1.9
2.9
41.4
44.7
Minor BPS
49.5
0.04
2.3
80.84
41

Associated Gene:

Gene:
SLF2
Ensembl Gene ID:
ENSAPLG00000004041
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004149
23329936 - 23357231
27296