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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_23345912_23346838_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
23345912 - 23346838
Intron Length:
927

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTTGTTTC
5'SS Class:
major
3'SS Sequence:
ATTGTTATTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTTAT
U12 Branch Point Sequence:
TTATTGTTATTT
Flanking Amino Acid:
HLLKEKEESKRLDELEKLLQ
Intron Amino Acid Position:
718

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.3
0.64
1.1
76.1
34
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
81.7
0.71
0.9
78.6
39.1
Minor 5ss
47.2
-0.3
2.4
61.9
42.9
Minor BPS
50.8
0.1
2.2
75.9
41.4

Associated Gene:

Gene:
SLF2
Ensembl Gene ID:
ENSAPLG00000004041
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004149
23329936 - 23357231
27296