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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_23350371_23351350_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
23350371 - 23351350
Intron Length:
980

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGTGCTG
5'SS Class:
major
3'SS Sequence:
ACGTTTTTCGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAA
U12 Branch Point Sequence:
TTTTTCTTAAAC
Flanking Amino Acid:
THSGSGEAASDDPTQPKQFQ
Intron Amino Acid Position:
307

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.3
0.43
1.1
57.1
47.2
Major BPS
82.2
0.8
0.8
71.9
35.8
Major PPT
73.5
0.53
0.9
69.3
36.2
Minor 5ss
33
-1.9
3.6
46.8
48.6
Minor BPS
81.7
0.97
1.2
87.41
28.5

Associated Gene:

Gene:
SLF2
Ensembl Gene ID:
ENSAPLG00000004041
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004149
23329936 - 23357231
27296