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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_23351409_23352409_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
23351409 - 23352409
Intron Length:
1001

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGTGTTTA
5'SS Class:
strong_major
3'SS Sequence:
ATTTTGTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
ATGCAATTAACT
Flanking Amino Acid:
LISGTSVSHQENGYQLRNIT
Intron Amino Acid Position:
288

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.8
0.84
0.8
81.9
26.3
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
83.4
0.75
0.8
81.7
35.4
Minor 5ss
44.4
-0.6
2.7
57.6
47.1
Minor BPS
56
0.27
1.8
74.7
41.2

Associated Gene:

Gene:
SLF2
Ensembl Gene ID:
ENSAPLG00000004041
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004149
23329936 - 23357231
27296