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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_23353114_23353604_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
23353114 - 23353604
Intron Length:
491

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATTATA
5'SS Class:
strong_major
3'SS Sequence:
TTTGCTCTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATGAT
U12 Branch Point Sequence:
GATTCTGTGATA
Flanking Amino Acid:
KDFFKPVLKQDLSHKDRSVL
Intron Amino Acid Position:
53

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.7
0.91
0.9
89
24.5
Major BPS
75.8
0.64
1
65.8
41
Major PPT
83.4
0.75
0.7
81.7
30.3
Minor 5ss
39.4
-1.2
2.8
51.5
45
Minor BPS
49.8
-0
2
63.27
37.3

Associated Gene:

Gene:
SLF2
Ensembl Gene ID:
ENSAPLG00000004041
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004149
23329936 - 23357231
27296