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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_23353649_23357118_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
23353649 - 23357118
Intron Length:
3470

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGGCCG
5'SS Class:
major
3'SS Sequence:
GTTTTCTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAA
U12 Branch Point Sequence:
TTCTTCTTAAAA
Flanking Amino Acid:
AAGREAARDCRNQSIKDFFK
Intron Amino Acid Position:
38

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.7
0.63
1.1
57.9
46.7
Major BPS
82.2
0.8
0.8
71.9
35.8
Major PPT
90.7
0.92
0.7
88.7
28.3
Minor 5ss
29.7
-2.3
3.4
38.8
46.5
Minor BPS
75.3
0.79
1.3
80.08
35.8

Associated Gene:

Gene:
SLF2
Ensembl Gene ID:
ENSAPLG00000004041
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004149
23329936 - 23357231
27296