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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_23382199_23382536_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
23382199 - 23382536
Intron Length:
338

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTTAGTCTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTTCCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCACCAT
U12 Branch Point Sequence:
TTTGTGTCACCA
Flanking Amino Acid:
IDKLSFWIGETVFLIWNSLN
Intron Amino Acid Position:
56

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.9
0.82
1.1
83
36.1
Major BPS
53
0.08
1.4
63
42.7
Major PPT
90.5
0.91
0.6
84.4
30.5
Minor 5ss
36.5
-1.5
3
50.8
45.5
Minor BPS
43.2
-0.5
2.4
62.43
44.3

Associated Gene:

Gene:
MFSD13A
Ensembl Gene ID:
ENSAPLG00000003639
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003732
23381930 - 23388356
6427