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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_23382617_23383388_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
23382617 - 23383388
Intron Length:
772

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTAAGTAAA
5'SS Class:
major
3'SS Sequence:
TCTTCTGTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
GTGTCTAAAACT
Flanking Amino Acid:
LSDRVFLSTQQPGAEISSPE
Intron Amino Acid Position:
82

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.4
0.67
1
77.3
32.8
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
85.1
0.79
0.8
80.1
31.8
Minor 5ss
37.2
-1.4
2.8
47.9
41.8
Minor BPS
52
0.14
2
73.35
43.6

Associated Gene:

Gene:
MFSD13A
Ensembl Gene ID:
ENSAPLG00000003639
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003732
23381930 - 23388356
6427