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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_23383536_23383646_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
23383536 - 23383646
Intron Length:
111

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTACGACAG
5'SS Class:
major
3'SS Sequence:
GCTCTCTCTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GCCTCAA
U12 Branch Point Sequence:
CGAGCCTCAACT
Flanking Amino Acid:
PGVQFLLCLCIAIGSLSVFM
Intron Amino Acid Position:
131

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67
0.4
1.2
55.7
43.2
Major BPS
55.4
0.13
1.2
59.5
39
Major PPT
80.4
0.68
0.8
77
31.7
Minor 5ss
32.7
-2
3.4
43.2
44.1
Minor BPS
57.3
0.31
1.7
69.99
46.3

Associated Gene:

Gene:
MFSD13A
Ensembl Gene ID:
ENSAPLG00000003639
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003732
23381930 - 23388356
6427