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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_23383839_23384694_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
23383839 - 23384694
Intron Length:
856

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTGTC
5'SS Class:
major
3'SS Sequence:
CCTCTCCCTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTGT
U12 Branch Point Sequence:
TTGTCCTTCCTC
Flanking Amino Acid:
AKWDQESTLKQLYIEKHSVP
Intron Amino Acid Position:
195

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.5
0.65
1
73.7
35.7
Major BPS
38.1
-0.7
4.3
71.7
44.6
Major PPT
76.3
0.59
0.7
73.7
24.6
Minor 5ss
39.4
-1.2
3.3
58.2
40.5
Minor BPS
44.2
-0.4
3.6
69.56
42.8

Associated Gene:

Gene:
MFSD13A
Ensembl Gene ID:
ENSAPLG00000003639
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003732
23381930 - 23388356
6427