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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_23424922_23425632_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
23424922 - 23425632
Intron Length:
711

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
AAA|GCACCACTT
5'SS Class:
weak_major
3'SS Sequence:
ATTGGGAGGGCAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTCACAT
U12 Branch Point Sequence:
CTTCACATGATA
Flanking Amino Acid:
LSFQFSCSLIKRNCRISLLS
Intron Amino Acid Position:
39

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
57.6
0.18
1.3
60.4
43.9
Major BPS
77.7
0.69
1
83.3
27.7
Major PPT
50
0
1.2
43.8
46
Minor 5ss
33.8
-1.9
4.4
56.3
42.4
Minor BPS
47.8
-0.1
1.8
61.9
38

Associated Gene:

Gene:
SUFU
Ensembl Gene ID:
ENSAPLG00000002654
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047261
23424806 - 23468711
43906
ENSAPLT00000002717
23424806 - 23468711
43906