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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_23427910_23434967_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
23427910 - 23434967
Intron Length:
7058

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTATGTCTT
5'SS Class:
major
3'SS Sequence:
TCTTTTCAAGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
ATCTTTTCAAGC
Flanking Amino Acid:
TIFEIDPHLQERVDKGIETD
Intron Amino Acid Position:
146

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.9
0.68
1
77.2
37.7
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
77.2
0.61
0.9
74.9
33.7
Minor 5ss
48
-0.2
2.8
67.6
37.2
Minor BPS
49
-0
1.8
59.84
40

Associated Gene:

Gene:
SUFU
Ensembl Gene ID:
ENSAPLG00000002654
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047261
23424806 - 23468711
43906
ENSAPLT00000002717
23424806 - 23468711
43906