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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_23466017_23468621_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
23466017 - 23468621
Intron Length:
2605

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGCTG
5'SS Class:
strong_major
3'SS Sequence:
GTTGTCTTAACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTAAC
U12 Branch Point Sequence:
GTTGTCTTAACA
Flanking Amino Acid:
DLEDLNSPEEFKLPKEYSWP
Intron Amino Acid Position:
295

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.9
73.4
43.3
Major BPS
74.5
0.61
1.1
75.6
36.6
Major PPT
74.9
0.56
1
69.8
40.4
Minor 5ss
34.4
-1.8
3.4
46.7
48.6
Minor BPS
75.1
0.79
1.3
79.59
36.6

Associated Gene:

Gene:
SUFU
Ensembl Gene ID:
ENSAPLG00000002654
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047261
23424806 - 23468711
43906
ENSAPLT00000002717
23424806 - 23468711
43906