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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_23479359_23479570_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
23479359 - 23479570
Intron Length:
212

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGGGGA
5'SS Class:
strong_major
3'SS Sequence:
TCCTGCCCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTGCCAA
U12 Branch Point Sequence:
AGGGGCTGAGCC
Flanking Amino Acid:
KLESDKRLVEEKVSQLKDEV
Intron Amino Acid Position:
32

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
69.2
37.4
Major BPS
44.2
-0.3
1.4
50.2
45.2
Major PPT
71
0.47
0.8
61.6
35
Minor 5ss
23.1
-3.1
3.2
29
43.5
Minor BPS
40.7
-0.7
2
46.3
42.4

Associated Gene:

Gene:
TRIM8
Ensembl Gene ID:
ENSAPLG00000002530
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002547
23479263 - 23482138
2876