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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_23479805_23480211_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
23479805 - 23480211
Intron Length:
407

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCCCT
5'SS Class:
strong_major
3'SS Sequence:
CTTCCCCTCCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTCAC
U12 Branch Point Sequence:
TCCTCACTGACC
Flanking Amino Acid:
DKTEDINFMKNTKSVKILMD
Intron Amino Acid Position:
110

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
0.9
71.4
40.3
Major BPS
72.4
0.56
1
73.5
32.5
Major PPT
73.7
0.53
0.7
65.8
30.2
Minor 5ss
35.1
-1.7
3.1
48.4
47.3
Minor BPS
49.3
-0
2
63.77
41.9

Associated Gene:

Gene:
TRIM8
Ensembl Gene ID:
ENSAPLG00000002530
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002547
23479263 - 23482138
2876