Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_23480641_23481348_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

23480641 - 23481348

Intron Length:

708

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGGGTGAA

5'SS Class:

strong_major

3'SS Sequence:

GTTCCCCCCGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ACCTGAC

U12 Branch Point Sequence:

GAAACCTGACGT

Flanking Amino Acid:

KEKQLRKLLEGPLSTPVPFL

Intron Amino Acid Position:

159

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.1

0.76

0.9

73.7

32.5

Major BPS

60.1

0.25

35.6

Major PPT

72.9

0.52

0.8

66.2

Minor 5ss

25.2

-2.9

3.2

30.3

43.5

Minor BPS

43.6

-0.4

56.92

44.6

Associated Gene:

Gene:

TRIM8

Ensembl Gene ID:

ENSAPLG00000002530

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000002547

23479263 - 23482138

2876