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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_23497135_23502708_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
23497135 - 23502708
Intron Length:
5574

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGCTC
5'SS Class:
strong_major
3'SS Sequence:
TCTCCATCCTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
AATACCGTATCC
Flanking Amino Acid:
CSALSGEGVQNTCQRFCVST
Intron Amino Acid Position:
202

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.2
0.83
0.9
73
38.2
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
76.3
0.59
0.8
73.5
30.2
Minor 5ss
29.9
-2.3
3.4
41
45.6
Minor BPS
47.6
-0.2
2.2
62.95
42.1

Associated Gene:

Gene:
ARL3
Ensembl Gene ID:
ENSAPLG00000016017
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023518
23496111 - 23511830
15720