About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_23502895_23504874_R

Intron Information:

Intron Rank:
4
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
23502895 - 23504874
Intron Length:
1980

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCTTC
5'SS Class:
strong_major
3'SS Sequence:
GTAAATGATATAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTGTAAA
U12 Branch Point Sequence:
TCCCTTGTAAAT
Flanking Amino Acid:
DRKRFEETGQELAELLDEEK
Intron Amino Acid Position:
118

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.7
0.86
0.9
78.3
32.5
Major BPS
75.2
0.63
1.1
75.9
36.3
Major PPT
54.7
0.11
1.1
47
44.6
Minor 5ss
43
-0.8
3
58.3
46.6
Minor BPS
45.4
-0.2
2
61.29
43.1

Associated Gene:

Gene:
ARL3
Ensembl Gene ID:
ENSAPLG00000016017
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035124
23501543 - 23515152
13610
ENSAPLT00000023518
23496111 - 23511830
15720
ENSAPLT00000016714
23494351 - 23515152
20802
ENSAPLT00000040405
23494459 - 23515152
20694