Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_23504926_23509126_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

23504926 - 23509126

Intron Length:

4201

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTT|GTGAGTATT

5'SS Class:

major

3'SS Sequence:

CTTTCTTTTTCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

AAGTAAC

U12 Branch Point Sequence:

GGAAAAGTAACT

Flanking Amino Acid:

RNYFENTDILIYVIDSADRK

Intron Amino Acid Position:

101

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

75.8

0.61

81.7

31.1

Major BPS

57.9

0.2

1.1

59.4

34.8

Major PPT

93.1

0.97

0.6

91.8

Minor 5ss

38.8

-1.3

57.3

41.2

Minor BPS

41.2

-0.5

2.3

58.13

43.4

Associated Gene:

Gene:

ARL3

Ensembl Gene ID:

ENSAPLG00000016017

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000035124

23501543 - 23515152

13610

ENSAPLT00000023518

23496111 - 23511830

15720

ENSAPLT00000016714

23494351 - 23515152

20802

ENSAPLT00000040405

23494459 - 23515152

20694