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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_23509244_23510239_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
23509244 - 23510239
Intron Length:
996

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGAAG
5'SS Class:
strong_major
3'SS Sequence:
CTGCTCTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GGTTTAT
U12 Branch Point Sequence:
TATGCTCTATGT
Flanking Amino Acid:
EDISHITPTQGFNIKSVQSQ
Intron Amino Acid Position:
62

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.8
0.84
0.9
74.7
37
Major BPS
63.5
0.34
1.4
57.4
49.1
Major PPT
81.1
0.7
0.8
72.7
37.5
Minor 5ss
26.2
-2.7
2.9
29.6
43.4
Minor BPS
44.1
-0.3
2.2
65.28
45.4

Associated Gene:

Gene:
ARL3
Ensembl Gene ID:
ENSAPLG00000016017
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035124
23501543 - 23515152
13610
ENSAPLT00000023518
23496111 - 23511830
15720
ENSAPLT00000016714
23494351 - 23515152
20802
ENSAPLT00000040405
23494459 - 23515152
20694