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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_23510384_23511725_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
23510384 - 23511725
Intron Length:
1342

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGATTTGG
5'SS Class:
major
3'SS Sequence:
CTTGCTGATTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTGAT
U12 Branch Point Sequence:
TCTTGCTGATTT
Flanking Amino Acid:
CEHPRALRLTGLLSILRKLK
Intron Amino Acid Position:
36

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.2
0.48
1.1
58.9
42.5
Major BPS
76.2
0.65
1.1
65.3
43.7
Major PPT
68.3
0.41
1
66.2
39.9
Minor 5ss
34.7
-1.7
2.8
41.1
45.2
Minor BPS
49
0
2.1
72.32
45

Associated Gene:

Gene:
ARL3
Ensembl Gene ID:
ENSAPLG00000016017
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023518
23496111 - 23511830
15720