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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_23510384_23514934_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
23510384 - 23514934
Intron Length:
4551

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATCAGA
5'SS Class:
major
3'SS Sequence:
CTTGCTGATTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTGAT
U12 Branch Point Sequence:
TCTTGCTGATTT
Flanking Amino Acid:
TFAALQPKIKGLLSILRKLK
Intron Amino Acid Position:
14

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1
70.8
41.1
Major BPS
76.2
0.65
1.1
65.3
43.7
Major PPT
68.3
0.41
1
66.2
39.9
Minor 5ss
38.8
-1.3
2.8
49.6
46.2
Minor BPS
49
0
2.1
72.32
45

Associated Gene:

Gene:
ARL3
Ensembl Gene ID:
ENSAPLG00000016017
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035124
23501543 - 23515152
13610
ENSAPLT00000016714
23494351 - 23515152
20802
ENSAPLT00000040405
23494459 - 23515152
20694