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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_23521599_23521913_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
23521599 - 23521913
Intron Length:
315

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTGAGTGTG
5'SS Class:
major
3'SS Sequence:
CCTGTCCCCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTGGCAG
U12 Branch Point Sequence:
AGAGCCCCAGGG
Flanking Amino Acid:
NCVNIPMMRQQEIINGVTVT
Intron Amino Acid Position:
201

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.2
0.52
1
66.3
39.5
Major BPS
37.4
-0.7
1.7
42.8
49.4
Major PPT
73
0.52
0.8
69.4
31.3
Minor 5ss
33
-1.9
3.3
45.7
43.5
Minor BPS
33.4
-1.3
2
32.68
39.9

Associated Gene:

Gene:
SFXN2
Ensembl Gene ID:
ENSAPLG00000030360
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024966
23520153 - 23523531
3379