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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_23522133_23522268_F

Intron Information:

Intron Rank:
7
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
23522133 - 23522268
Intron Length:
136

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGA|GTGAGTACG
5'SS Class:
major
3'SS Sequence:
TCTCGGCACCTAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CGCTCAG
U12 Branch Point Sequence:
GTCTCGGCACCT
Flanking Amino Acid:
SRITMAAPGMIILPIIMERL
Intron Amino Acid Position:
244

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.5
0.51
1
65.1
40.7
Major BPS
47.4
-0.1
1.6
54.7
43.1
Major PPT
59.6
0.22
0.9
50.8
38.4
Minor 5ss
31.9
-2.1
2.6
31.4
35.6
Minor BPS
37.6
-0.8
2.7
60.32
48.9

Associated Gene:

Gene:
SFXN2
Ensembl Gene ID:
ENSAPLG00000030360
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024966
23520153 - 23523531
3379