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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_23522319_23522389_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
23522319 - 23522389
Intron Length:
71

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCCCG
5'SS Class:
strong_major
3'SS Sequence:
TCTTCCCTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CCCTGAC
U12 Branch Point Sequence:
GGGCCCTGACCC
Flanking Amino Acid:
ERLEKFPFMQRIRVLHAPLQ
Intron Amino Acid Position:
261

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
1
62.3
43.9
Major BPS
56.5
0.16
1.1
48.6
36.6
Major PPT
86.6
0.82
0.7
81
24.1
Minor 5ss
32.7
-2
3
39.3
46.1
Minor BPS
47.6
-0.2
1.8
54.7
42.6

Associated Gene:

Gene:
SFXN2
Ensembl Gene ID:
ENSAPLG00000030360
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024966
23520153 - 23523531
3379