About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_23522440_23522598_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
23522440 - 23522598
Intron Length:
159

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTT|GTGAGTATC
5'SS Class:
major
3'SS Sequence:
TCTCTCCCCACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTGAC
U12 Branch Point Sequence:
TCTCTCCCCACA
Flanking Amino Acid:
APLQVLLCGGFLVFMVPAAC
Intron Amino Acid Position:
277

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.4
0.58
1
76.1
32.8
Major BPS
61.3
0.28
1
52.7
34.2
Major PPT
78.6
0.64
0.7
72.6
25.7
Minor 5ss
37.4
-1.4
2.9
51.7
39.2
Minor BPS
42.6
-0.5
2.1
57.29
42

Associated Gene:

Gene:
SFXN2
Ensembl Gene ID:
ENSAPLG00000030360
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024966
23520153 - 23523531
3379