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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_23525857_23543513_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
23525857 - 23543513
Intron Length:
17657

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGGGG
5'SS Class:
strong_major
3'SS Sequence:
TGTTAATTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTAAT
U12 Branch Point Sequence:
GCCCTGTTAATT
Flanking Amino Acid:
GLPASVEPAQNTGIYGAGRM
Intron Amino Acid Position:
30

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.9
67.8
43.5
Major BPS
84.4
0.85
1
84
34.5
Major PPT
80.7
0.69
0.9
74
40.3
Minor 5ss
28.6
-2.5
3.5
37.8
47.1
Minor BPS
47.7
-0.1
2
60.97
43.5

Associated Gene:

Gene:
WBP1L
Ensembl Gene ID:
ENSAPLG00000012879
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026879
23525630 - 23578361
52732