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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_23565999_23570481_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
23565999 - 23570481
Intron Length:
4483

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGT|GTAAGTCCT
5'SS Class:
major
3'SS Sequence:
TTCTCTTTCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CCTGCAT
U12 Branch Point Sequence:
GCCTCCTGCATG
Flanking Amino Acid:
QCCNYYYELWCVRNFTSGCC
Intron Amino Acid Position:
44

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.7
0.56
1.1
68.3
42.6
Major BPS
50.1
0
1.4
63
43.2
Major PPT
88.2
0.86
0.6
87.7
22.4
Minor 5ss
38.8
-1.3
3
52.6
43.7
Minor BPS
46.3
-0.4
2
48.4
45.4

Associated Gene:

Gene:
WBP1L
Ensembl Gene ID:
ENSAPLG00000012879
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026354
23556456 - 23578361
21906